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Software for Sequence Alignment - Global
  • esim4 - Align mRNA with a genomic DNA sequence (part of the EMBOSS package)
  • est2genome - Align EST and genomic DNA sequences (part of the EMBOSS package)
  • needle - Needleman-Wunsch global alignment (part of the EMBOSS package)
  • stretcher - Find the best global alignment between two sequences (part of the EMBOSS package)
University of California, San Diego