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• biosed - Replace or delete sequence sections (part of the EMBOSS package)
• cutseq - Remove a specified section from a sequence (part of the EMBOSS package)
• degapseq - Remove gap characters from a sequence (part of the EMBOSS package)
• descseq - Alter the name or description of a sequence (part of the EMBOSS package)
• extractfeat - Extract features from a sequence (part of the EMBOSS package)
• extractseq - Extract regions from a sequence (part of the EMBOSS package)
• listor - Write a list file of the logical OR of two sets of sequences (part of the EMBOSS package)
• maskfeat - Mask off features of a sequence (part of the EMBOSS package)
• maskseq - Mask off regions of a sequence (part of the EMBOSS package)
• newseq - Type in a short new sequence (part of the EMBOSS package)
• noreturn - Remove carriage returns from ASCII files (part of the EMBOSS package)
• notseq - Exclude a set of sequences and write out the remaining ones (part of the EMBOSS package)
• nthseq - Write one sequence from a multiple set of sequences (part of the EMBOSS package)
• pasteseq - Insert one sequence into another (part of the EMBOSS package)
• revseq - Reverse and complement a sequence (part of the EMBOSS package)
• SEG - Divide sequences into contrasting segments of low-complexity and high-complexity
• seqretsplit - Read and write sequences in individual files (part of the EMBOSS package)
• skipseq - Read and write sequences, skipping the first few (part of the EMBOSS package)
• splitter - Split a sequence into overlapping (smaller) sequences (part of the EMBOSS package)
• trimest - Trim poly-A tails off EST sequences (part of the EMBOSS package)
• trimseq - Trim ambiguous bits off the ends of sequences (part of the EMBOSS package)
• union - Read sequence fragments and build one sequence (part of the EMBOSS package)
• vectorstrip - Strip out DNA between a pair of vector sequences (part of the EMBOSS package)
• yank - Read a sequence range and append the full USA to a list file (part of the EMBOSS package)